STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0893PFAM: NADPH-dependent FMN reductase; KEGG: gsu:GSU0772 NADPH-dependent FMN reductase domain protein. (200 aa)    
Predicted Functional Partners:
Sfum_3391
PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dvu:DVU1220 nitroreductase family protein.
 
  
 0.594
Sfum_0892
PFAM: helix-turn-helix, HxlR type; KEGG: dvu:DVU2423 transcriptional regulator, putative.
 
     0.565
Sfum_2781
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: deh:cbdb_A56 redox family protein.
 
     0.529
Sfum_2044
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: pmu:PM1974 hypothetical E.coli.
   
  
 0.462
Sfum_0879
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY2944 hypothetical protein.
 
     0.427
Sfum_1721
PFAM: Catalase domain protein; KEGG: dvu:DVUA0091 catalase; Belongs to the catalase family.
  
  
 0.405
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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