STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0903PFAM: peptidase C1A, papain; KEGG: mma:MM3203 hypothetical protein. (496 aa)    
Predicted Functional Partners:
Sfum_3231
Peptidyl-prolyl cis-trans isomerase, cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.663
Sfum_1338
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.652
Sfum_1320
Hypothetical protein; KEGG: jan:Jann_2863 endonuclease.
   
 0.616
Sfum_2326
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mba:Mbar_A0529 cell division cycle protein 48 homolog; Belongs to the AAA ATPase family.
 
 
 0.609
Sfum_2526
TGS domain protein; PFAM: GTP-binding protein, HSR1-related; TGS domain protein; KEGG: ade:Adeh_2114 GTP-binding protein, HSR1-related.
    
   0.573
Sfum_1925
Hypothetical protein; KEGG: bld:BLi02343 YpbR.
   
 
 0.563
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.560
Sfum_2248
PFAM: multicopper oxidase, type 2; KEGG: ade:Adeh_3299 multicopper oxidase, type 2.
   
 
 0.560
Sfum_1533
PFAM: Citrate synthase; KEGG: tth:TTC0978 citrate synthase; Belongs to the citrate synthase family.
    
 
 0.538
Sfum_2105
PFAM: Citrate synthase; KEGG: tth:TTC0978 citrate synthase; Belongs to the citrate synthase family.
    
 
 0.538
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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