STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0975Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: bcl:ABC3697 sugar transferase. (391 aa)    
Predicted Functional Partners:
Sfum_2183
PFAM: lipopolysaccharide biosynthesis; KEGG: noc:Noc_1497 protein-tyrosine kinase.
 
  
 0.963
Sfum_3321
PFAM: lipopolysaccharide biosynthesis; KEGG: noc:Noc_1497 protein-tyrosine kinase.
 
  
 0.962
Sfum_0976
ATPases involved in chromosome partitioning-like; KEGG: bha:BH3668 capsular polysaccharide biosynthesis.
 
  
 0.945
Sfum_0979
PFAM: polysaccharide export protein; KEGG: mxa:MXAN_3225 polysaccharide biosynthesis/export protein.
 
  
 0.885
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.844
Sfum_0973
PFAM: transferase hexapeptide repeat containing protein; KEGG: mag:amb0106 acetyltransferase.
 
  
 0.835
Sfum_2209
KEGG: rru:Rru_A2406 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.823
Sfum_0978
PFAM: lipopolysaccharide biosynthesis; KEGG: rru:Rru_A3715 lipopolysaccharide biosynthesis.
 
  
 0.821
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.820
Sfum_2182
PFAM: polysaccharide export protein; KEGG: mfa:Mfla_2026 polysaccharide export protein.
 
  
 0.808
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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