STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_1084TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sat:SYN_00852 periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (429 aa)    
Predicted Functional Partners:
Sfum_1082
PFAM: protein of unknown function DUF214; KEGG: sat:SYN_00854 export ABC transporter permease protein.
  
 0.974
Sfum_1083
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00853 ABC transporter ATP-binding commponent.
 
 0.963
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 0.942
Sfum_1085
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_00851 type I secretion outer membrane protein.
 
 0.893
Sfum_2234
PFAM: protein of unknown function DUF214; KEGG: cte:CT0378 ABC transporter, ATP-binding protein.
 
  
 0.887
Sfum_3116
PFAM: outer membrane efflux protein; KEGG: gme:Gmet_0785 outer membrane efflux protein.
 
 
 0.719
Sfum_2233
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA1848 transmembrane ATP-binding ABC transporter protein.
 
 0.699
Sfum_2809
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reu:Reut_B4486 RND efflux system, outer membrane lipoprotein, NodT.
 
 0.688
Sfum_3378
PFAM: outer membrane efflux protein; KEGG: mca:MCA2154 outer membrane protein CyaE, putative.
 
 
 0.687
Sfum_3678
PFAM: outer membrane efflux protein; KEGG: sat:SYN_02073 type I secretion outer membrane protein.
 
 0.686
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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