STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_1124Hypothetical protein; KEGG: bta:616179 similar to ectodysplasin A isoform EDA-A2. (375 aa)    
Predicted Functional Partners:
Sfum_2839
PFAM: protein of unknown function DUF1625; KEGG: mlo:mll2895 hypothetical protein.
  
     0.757
Sfum_4064
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bba:Bd1292 hypothetical protein.
 
  
 0.756
Sfum_1023
PFAM: LCCL domain protein; KEGG: jan:Jann_2668 LCCL.
  
     0.741
Sfum_4063
PFAM: NHL repeat containing protein; YD repeat-containing protein; KEGG: ade:Adeh_0323 hypothetical protein.
 
  
 0.728
Sfum_0779
PFAM: sulfotransferase; KEGG: sru:SRU_0615 sulfotransferase domain superfamily.
  
     0.707
Sfum_0960
KEGG: dre:569036 hypothetical protein LOC569036.
  
     0.697
Sfum_0477
5-formyltetrahydrofolate cyclo-ligase-like; KEGG: mmu:234814 methenyltetrahydrofolate synthetase domain containing.
 
    0.638
Sfum_1598
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: gme:Gmet_0367 cell divisionFtsK/SpoIIIE.
  
 
 0.573
Sfum_0175
PFAM: Calcium-binding EF-hand-containing protein; KEGG: rso:RSc3104 putative calcium binding signal peptide protein.
  
     0.560
Sfum_2547
PFAM: protein of unknown function DUF255; KEGG: chy:CHY_1723 hypothetical protein.
    
 
 0.543
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.