STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_1148KEGG: mta:Moth_1605 cytochrome c family protein. (137 aa)    
Predicted Functional Partners:
Sfum_1150
PFAM: Polysulphide reductase, NrfD; KEGG: mta:Moth_1603 polysulphide reductase, NrfD.
 
  
 0.976
Sfum_1147
KEGG: mta:Moth_1606 4Fe-4S ferredoxin, iron-sulfur binding.
 
  
 0.960
Sfum_1146
PFAM: Nitrate reductase, gamma subunit; KEGG: mta:Moth_1602 nitrate reductase, gamma subunit.
 
  
 0.957
Sfum_1145
KEGG: mta:Moth_1607 hypothetical protein.
 
     0.926
Sfum_1149
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mta:Moth_1604 4Fe-4S ferredoxin, iron-sulfur binding.
 
  
 0.921
Sfum_4042
TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit.
 
  
 0.803
Sfum_4043
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dps:DP0798 probable dissimilatory sulfite reductase, beta subunit (DsrB).
 
  
 0.790
Sfum_3216
Hypothetical protein.
  
     0.732
Sfum_4045
PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, gamma subunit.
 
   
 0.700
Sfum_3532
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: dps:DP1009 Fe-S oxidoreductase.
 
  
 0.603
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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