Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sfum_1237KEGG: dvu:DVU0742 hypothetical protein. (313 aa)    
Predicted Functional Partners:
Sfum_0181
PFAM: UspA domain protein; KEGG: sat:SYN_00726 UspA family domain-containing protein.
  
     0.768
Sfum_4024
KEGG: dde:Dde_2840 hypothetical protein.
  
     0.761
Sfum_4047
PFAM: cytochrome c, class III; KEGG: dvu:DVU0263 acidic cytochrome c3.
  
 
 0.759
Sfum_1746
Hypothetical protein; KEGG: sat:SYN_00931 integrin-like repeat protein.
  
    0.748
Sfum_0040
KEGG: dps:DP0127 hypothetical protein.
  
     0.743
Sfum_0468
KEGG: dvu:DVU3352 lipoprotein, putative.
  
     0.722
Sfum_1745
Hypothetical protein; KEGG: gsu:GSU3304 LamB porin family protein, putative.
  
     0.716
Sfum_4041
Hypothetical protein; KEGG: dvu:DVU0404 dissimilatory sulfite reductase B.
  
     0.710
Sfum_0005
PFAM: TPR repeat-containing protein; peptidase M48, Ste24p; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dps:DP0525 hypothetical protein.
  
     0.693
Sfum_0413
Uncharacterized domain; KEGG: dps:DP1955 hypothetical protein; TIGRFAM: uncharacterized domain; PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
   0.682
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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