STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_1312PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0223 methylase involved in ubiquinone/menaquinone biosynthesis-like. (303 aa)    
Predicted Functional Partners:
Sfum_1313
KEGG: pca:Pcar_0224 hypothetical protein.
 
    0.950
Sfum_1315
KEGG: dsy:DSY0881 hypothetical protein.
 
  
 0.925
Sfum_1314
PFAM: Radical SAM domain protein; KEGG: pca:Pcar_0225 hypothetical protein.
 
     0.923
Sfum_1311
Aldehyde dehydrogenase, iron-sulfur subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: dsy:DSY1986 hypothetical protein.
 
  
 0.909
Sfum_1317
PFAM: metal-dependent phosphohydrolase, HD sub domain; Phosphoglycerate mutase; KEGG: dsy:DSY1981 hypothetical protein.
 
     0.887
Sfum_1310
Aldehyde dehydrogenase, molybdenum-binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dsy:DSY1987 hypothetical protein.
 
    0.836
Sfum_1316
PFAM: protein of unknown function DUF182; KEGG: pca:Pcar_0227 hypothetical protein.
 
    0.781
Sfum_0266
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gka:GK0592 hypothetical protein.
  
     0.762
Sfum_1190
Methyltransferase type 11; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11.
  
     0.754
Sfum_3569
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mta:Moth_1443 UbiE/COQ5 methyltransferase.
  
     0.660
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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