STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_1347TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: neu:NE0121 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Sfum_1346
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like; KEGG: neu:NE0120 hypothetical protein.
 
 
 0.998
Sfum_1348
TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: ttj:TTHB148 hypothetical protein.
  
 
 0.994
Sfum_1349
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: net:Neut_2216 CRISPR-associated protein, Csm1 family protein.
 
 
 0.994
Sfum_1345
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: neu:NE0119 hypothetical protein.
  
 
 0.993
Sfum_1350
KEGG: sat:SYN_02254 hypothetical cytosolic protein.
 
  
 0.935
cas2
CRISPR-associated protein, Cas2 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.719
Sfum_1352
TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: chy:CHY_2124 hypothetical protein.
 
   
 0.657
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.615
Sfum_1351
Conserved hypothetical protein; KEGG: mja:MJ1673 M. jannaschii predicted coding region MJ1673.
 
     0.446
Sfum_1354
Conserved hypothetical protein; KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like.
 
     0.430
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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