STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_1831RNAse E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: gme:Gmet_2546 ribonuclease E and G. (495 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.894
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 
 0.864
Sfum_2066
Uncharacterised P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
   
 
 0.863
Sfum_2598
PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-stranded nucleic acid binding domain.
   
   0.784
Sfum_1830
KEGG: ade:Adeh_3814 CoA enzyme activase.
       0.776
Sfum_0536
Signal peptidase I. Serine peptidase. MEROPS family S26A; KEGG: sat:SYN_01527 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S26 family.
 
    0.740
Sfum_1452
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: eca:ECA2805 putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 
 0.735
rhlB
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
  
 
 0.735
Sfum_3846
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bps:BPSL0763 putative helicase SNF2 family protein.
   
 
 0.624
Sfum_0872
PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: AAA ATPase; KEGG: tel:tlr0740 hypothetical protein.
   
   0.576
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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