STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_1871PFAM: protein of unknown function DUF847; KEGG: eca:ECA2616 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Sfum_1893
KEGG: bbr:BB1710 phage-related hypothetical protein.
  
    0.980
Sfum_1889
Hypothetical protein; KEGG: dvu:DVU2157 tail tape meausure protein, putative.
 
    0.857
Sfum_1891
Phage-related protein-like; KEGG: ecs:ECs2164 putative minor tail protein.
  
    0.807
Sfum_3831
PFAM: GPW/gp25 family protein; KEGG: dde:Dde_0946 phage baseplate assembly protein W-like.
  
  
 0.792
Sfum_3822
KEGG: dde:Dde_0938 phage protein D-like.
  
  
 0.741
Sfum_0672
PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein.
  
  
 0.728
Sfum_3833
TIGRFAM: phage tail protein; KEGG: dde:Dde_1873 phage tail protein.
  
    0.677
Sfum_3815
PFAM: phage tail sheath protein; KEGG: dde:Dde_1889 hypothetical protein.
  
  
 0.657
Sfum_1872
KEGG: hch:HCH_04563 hypothetical protein.
       0.632
Sfum_1870
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB12434 O-GlcNAc transferase.
       0.452
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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