STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2066Uncharacterised P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities. (286 aa)    
Predicted Functional Partners:
Sfum_2067
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: sat:SYN_00943 nitrogen regulatory IIA protein.
  
  
 0.906
Sfum_1024
KEGG: sat:SYN_02961 hypothetical cytosolic protein.
  
  
 0.897
Sfum_1609
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: gsu:GSU3239 ribonuclease G.
   
 
 0.863
Sfum_1831
RNAse E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: gme:Gmet_2546 ribonuclease E and G.
   
 
 0.863
Sfum_2065
PFAM: PTS system fructose subfamily IIA component; KEGG: ade:Adeh_0148 phosphotransferase system, fructose subfamily IIA component.
 
   
 0.853
Sfum_0345
PFAM: protein of unknown function DUF402; KEGG: pfu:PF0022 putative RNase E.
   
 
 0.852
Sfum_2064
TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_3294 ribosomal-protein-alanine acetyltransferase.
 
    0.842
hpf
Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
  
 0.766
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.678
Sfum_2063
PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: dps:DP0823 phosphoenolpyruvate synthase/pyruvate phosphate dikinase.
       0.493
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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