STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsTSSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (86 aa)    
Predicted Functional Partners:
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.993
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.993
rpmB
PFAM: ribosomal protein L28; KEGG: sat:SYN_00885 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.993
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.993
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: rxy:Rxyl_1376 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.992
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
  
 
 0.992
rpmH
PFAM: ribosomal protein L34; KEGG: lpp:lpp3077 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
 
 0.992
rpmA
PFAM: ribosomal protein L27; KEGG: dps:DP2591 probable 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.992
rpsI
PFAM: ribosomal protein S9; KEGG: pca:Pcar_1899 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.991
rpsB
PFAM: ribosomal protein S2; KEGG: gsu:GSU1921 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
 
 0.990
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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