STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2095PFAM: inositol monophosphatase; KEGG: cbu:CBU_1133 inositol-1-monophosphatase. (269 aa)    
Predicted Functional Partners:
Sfum_1393
PFAM: inositol monophosphatase; KEGG: rxy:Rxyl_1545 inositol-1(or 4)-monophosphatase.
  
  
 
0.928
Sfum_1734
PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: aba:Acid345_2392 inositol-3-phosphate synthase.
  
 
 0.918
Sfum_1982
PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: afu:AF1794 myo-inositol-1-phosphate synthase (ino1).
  
 
 0.918
Sfum_2920
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bcn:Bcen_4241 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.916
Sfum_2923
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ccr:CC1159 hypothetical protein.
  
 
 0.916
Sfum_1206
PFAM: NUDIX hydrolase; KEGG: gme:Gmet_0988 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
 
  
 0.908
nadK
NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
 
  
 0.905
nusG
Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.
   
 
 0.864
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
   
 
 0.862
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   0.842
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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