STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2295Hypothetical protein. (71 aa)    
Predicted Functional Partners:
Sfum_2296
Hypothetical protein.
       0.746
Sfum_2297
PFAM: glycosyl transferase, family 2; KEGG: dvu:DVUA0069 GtrA family protein, selenocysteine-containing.
       0.746
Sfum_2298
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: ade:Adeh_3075 tetratricopeptide repeat protein.
       0.746
Sfum_2294
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: nmu:Nmul_A1159 periplasmic sensor signal transduction histidine kinase.
       0.580
Sfum_2292
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_0785 two component transpcriptional regulator, fis family.
       0.473
Sfum_2293
KEGG: sat:SYN_02091 hypothetical membrane protein.
       0.473
Sfum_2299
KEGG: gme:Gmet_2469 fibronectin, type III.
       0.401
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.