STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2352PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; KEGG: dde:Dde_3504 chloride channel family protein. (612 aa)    
Predicted Functional Partners:
Sfum_2777
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: gsu:GSU1700 phosphate acetyltransferase.
     
 0.547
Sfum_3846
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bps:BPSL0763 putative helicase SNF2 family protein.
   
 0.531
aspS-2
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
     
 0.490
Sfum_2349
KEGG: cyb:CYB_2529 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
       0.465
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
     
 0.442
Sfum_2713
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: gsu:GSU2721 NAD-reducing hydrogenase, alpha subunit.
     
 0.438
Sfum_1716
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: sat:SYN_02533 metallo-beta-lactamase superfamily.
       0.436
Sfum_2350
PFAM: glycoside hydrolase, family 57; KEGG: mta:Moth_1810 glycoside hydrolase, family 57.
       0.421
Sfum_2351
KEGG: cyb:CYB_2158 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
       0.421
Sfum_2347
KEGG: sat:SYN_02625 hypothetical cytosolic protein.
       0.408
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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