STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2411DegP2 peptidase. Serine peptidase. MEROPS family S01B; PFAM: peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: gvi:gll2097 probable serine protease. (366 aa)    
Predicted Functional Partners:
Sfum_1721
PFAM: Catalase domain protein; KEGG: dvu:DVUA0091 catalase; Belongs to the catalase family.
   
 0.611
Sfum_0227
PFAM: NUDIX hydrolase; KEGG: nma:NMA1263 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.
 
 
 0.573
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 
 0.557
Sfum_2410
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family.
  
    0.556
Sfum_1840
Hypothetical protein.
   
 
 0.552
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.549
Sfum_1404
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: tfu:Tfu_1904 fatty acid oxidation complex alpha-subunit.
   
 0.542
Sfum_1395
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A1009 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.538
Sfum_3584
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: afu:AF0435 enoyl-CoA hydratase.
    
 0.538
Sfum_0477
5-formyltetrahydrofolate cyclo-ligase-like; KEGG: mmu:234814 methenyltetrahydrofolate synthetase domain containing.
 
     0.536
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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