STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpsAPFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: gme:Gmet_0008 NAD-dependent glycerol-3-phosphate dehydrogenase-like; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (340 aa)    
Predicted Functional Partners:
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.944
Sfum_3499
PFAM: FAD dependent oxidoreductase; KEGG: dvu:DVU1940 anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.937
Sfum_3097
PFAM: phospholipid/glycerol acyltransferase; KEGG: mxa:MXAN_3288 acyltransferase; Belongs to the GPAT/DAPAT family.
    
 0.932
Sfum_3498
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dvu:DVU1939 anaerobic glycerol-3-phosphate dehydrogenase, B subunit, putative.
     
  0.900
Sfum_1843
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: pca:Pcar_1629 GTP-binding protein.
  
  
 0.849
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
     
 0.847
Sfum_0871
PFAM: phospholipid/glycerol acyltransferase; KEGG: lpn:lpg0551 1-acyl-sn-glycerol-3-phosphate acetyltransferase.
    
 0.833
Sfum_0937
KEGG: sru:SRU_2301 1-acyl-sn-glycerol-3-phosphate acetyltransferase, putative; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.833
Sfum_1596
KEGG: pca:Pcar_0644 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.833
Sfum_2692
Hypothetical protein.
       0.773
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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