STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2814PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1260 ABC transporter, permease protein. (377 aa)    
Predicted Functional Partners:
Sfum_2817
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1261 ABC transporter, ATP-binding protein.
 
 
 0.945
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 0.930
Sfum_2497
PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_2373 ABC-type transport system involved in lipoprotein release permease component-like.
     
  0.900
Sfum_3743
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2359 lipoprotein releasing system, transmembrane protein, LolC/E family.
     
  0.900
Sfum_2816
KEGG: gsu:GSU1258 NosL protein.
 
     0.886
Sfum_2818
KEGG: gsu:GSU1262 hypothetical protein.
 
     0.873
Sfum_2813
KEGG: mag:amb2918 hypothetical protein.
       0.798
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.778
Sfum_2233
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA1848 transmembrane ATP-binding ABC transporter protein.
  
 
 0.686
Sfum_2815
KEGG: gsu:GSU0793 hypothetical protein.
       0.673
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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