STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnXPhosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family. (277 aa)    
Predicted Functional Partners:
phnW
2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
  
 0.998
Sfum_2897
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btk:BT9727_1214 ABC transporter, permease; possible iron transporter.
 
     0.926
phnX2
TIGRFAM: phosphonoacetaldehyde hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: btk:BT9727_1215 possible phosphonoacetaldehyde hydrolase; Belongs to the HAD-like hydrolase superfamily. PhnX family.
  
  
 
0.902
Sfum_2899
PFAM: extracellular solute-binding protein, family 1; KEGG: pfl:PFL_5888 ABC transporter, periplasmic binding protein.
 
   
 0.867
Sfum_4101
KEGG: deh:cbdb_A478 hypothetical protein.
  
    0.725
Sfum_2898
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_03087 ABC-type spermidine/putrescine transport system, ATPase components.
 
     0.691
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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