STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2903PFAM: glycosyl transferase, group 1; KEGG: dvu:DVU0093 conserved domain protein/glycosyl transferase, group 1 family protein. (827 aa)    
Predicted Functional Partners:
Sfum_1891
Phage-related protein-like; KEGG: ecs:ECs2164 putative minor tail protein.
   
    0.774
Sfum_2504
KEGG: dde:Dde_1923 hypothetical protein.
  
  0.607
Sfum_2422
KEGG: dde:Dde_0905 hypothetical protein.
  
  0.587
Sfum_3998
KEGG: dde:Dde_0905 hypothetical protein.
  
  0.587
Sfum_0359
Alpha amylase, catalytic region; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme.
  
 0.549
Sfum_2349
KEGG: cyb:CYB_2529 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
 0.549
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.549
Sfum_3886
PFAM: glycoside hydrolase, family 13 domain protein; KEGG: ade:Adeh_3736 glycoside hydrolase, family 13-like.
  
 0.549
Sfum_3888
PFAM: glycoside hydrolase, family 13 domain protein; KEGG: ade:Adeh_3736 glycoside hydrolase, family 13-like.
  
 0.549
Sfum_0918
KEGG: noc:Noc_2990 hypothetical protein.
   
 
 0.547
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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