STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2969PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: afu:AF0973 bile acid-inducible operon protein F (BaiF-1); Belongs to the CoA-transferase III family. (517 aa)    
Predicted Functional Partners:
Sfum_2968
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: afu:AF0974 bile acid-inducible operon protein F (BaiF-2); Belongs to the CoA-transferase III family.
 
    
0.828
Sfum_2970
Hypothetical protein.
       0.545
Sfum_2966
Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: nha:Nham_1933 CBS domain containing membrane protein.
       0.426
Sfum_2967
Hypothetical protein.
       0.426
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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