STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3123PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2815 ceramide glucosyltransferase, putative. (415 aa)    
Predicted Functional Partners:
Sfum_3126
PFAM: YdjC family protein; KEGG: gsu:GSU1151 hypothetical protein.
 
   
 0.923
Sfum_3124
KEGG: syn:slr0521 hypothetical protein.
 
     0.922
Sfum_3127
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_2319 Fe-S protein, radical SAM family.
   
 0.919
Sfum_2929
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: reu:Reut_B4901 radical SAM.
   
 0.847
Sfum_0864
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility C-terminal domain; KEGG: gsu:GSU0687 dihydroflavonol 4-reductase, putative.
 
 
 0.834
Sfum_0865
PFAM: Radical SAM domain protein; KEGG: gme:Gmet_2823 radical SAM.
 
   
 0.778
Sfum_2736
KEGG: gsu:GSU0688 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
     0.758
Sfum_1989
KEGG: pca:Pcar_0355 squalene--hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
     0.749
Sfum_2255
Glycosyltransferases probably involved in cell wall biogenesis-like; KEGG: rba:RB9648 probable ceramide glucosyltransferase.
  
     0.713
Sfum_3526
PFAM: conserved hypothetical protein 374; KEGG: noc:Noc_1748 conserved hypothetical protein 374.
 
     0.705
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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