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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3209KEGG: sco:SCO1662 hypothetical protein. (312 aa)    
Predicted Functional Partners:
Sfum_3208
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dvu:DVU1358 hydrolase, haloacid dehalogenase-like family.
       0.737
Sfum_3210
Hypothetical protein.
       0.596
Sfum_3204
PFAM: protein of unknown function DUF369; KEGG: sat:SYN_02017 hypothetical cytosolic protein.
 
     0.529
Sfum_1745
Hypothetical protein; KEGG: gsu:GSU3304 LamB porin family protein, putative.
  
     0.509
Sfum_1404
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: tfu:Tfu_1904 fatty acid oxidation complex alpha-subunit.
  
     0.508
Sfum_3207
PFAM: aminotransferase, class IV; KEGG: bba:Bd1736 branched-chain amino acid aminotransferase.
       0.419
Sfum_3205
KEGG: gme:Gmet_0921 hypothetical protein.
       0.417
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
       0.417
Sfum_2514
tRNA (adenine-58-N(1)-) methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
 
     0.403
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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