STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3288PFAM: response regulator receiver; KEGG: dde:Dde_0603 response regulator receiver domain protein (CheY-like). (136 aa)    
Predicted Functional Partners:
Sfum_0656
PFAM: response regulator receiver; KEGG: dvu:DVU2966 response regulator.
  
  
 
0.908
Sfum_1502
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: deh:cbdb_A1591 sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.730
Sfum_3287
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dvu:DVU0173 thiosulfate reductase, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.725
Sfum_1487
KEGG: pca:Pcar_1993 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
 
 0.690
Sfum_0947
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sat:SYN_00875 response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
 
 0.641
Sfum_0854
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dps:DP2891 similar to two-component system sensor histidine kinase (Ntr family).
 
 
 0.600
Sfum_1383
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: gme:Gmet_0428 NifH/FrxC:cobyrinic acid a,c-diamide synthase.
  
 
 0.599
Sfum_2495
KEGG: hch:HCH_03588 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.565
Sfum_0583
PFAM: response regulator receiver; KEGG: aba:Acid345_3714 response regulator receiver protein.
 
   
 0.553
Sfum_0619
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dvu:DVU3216 sensor histidine kinase.
 
 
 
 0.535
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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