STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3305PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rxy:Rxyl_1212 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (247 aa)    
Predicted Functional Partners:
Sfum_2530
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: sat:SYN_02030 colligrin; Belongs to the CinA family.
  
  
 0.861
Sfum_1734
PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: aba:Acid345_2392 inositol-3-phosphate synthase.
 
   
 0.680
Sfum_1982
PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: afu:AF1794 myo-inositol-1-phosphate synthase (ino1).
 
   
 0.638
Sfum_3306
KEGG: pca:Pcar_0825 nicotinamide mononucleotide adenylyltransferase.
       0.573
Sfum_1122
Hypothetical protein; KEGG: gme:Gmet_2681 transcriptional regulator, putative.
 
    0.571
Sfum_3635
PFAM: protein of unknown function DUF343; KEGG: pca:Pcar_1262 hypothetical protein; Belongs to the UPF0434 family.
 
     0.494
Sfum_3304
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pca:Pcar_0823 sugar phosphate isomerases/epimerases-like.
       0.490
Sfum_0869
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: dvu:DVU3066 DNA-binding protein.
  
    0.477
Sfum_0397
Hypothetical protein; KEGG: fra:Francci3_3562 translation initiation factor IF-2.
  
    0.467
Sfum_3456
KEGG: gsu:GSU2048 hypothetical protein.
  
    0.467
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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