STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3409Cobyrinic acid a,c-diamide synthase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: dps:DP0339 hypothetical protein. (293 aa)    
Predicted Functional Partners:
Sfum_3410
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dps:DP0342 hypothetical protein.
 
  
 0.958
Sfum_3407
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: sat:SYN_01180 dinitrogenase iron-molybdenum cofactor protein.
  
 0.892
Sfum_3408
Cobyrinic acid a,c-diamide synthase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: sat:SYN_01186 iron-sulfur cluster and nucleotide-binding protein.
 
  
0.872
Sfum_3412
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: mbu:Mbur_0621 dinitrogenase iron-molybdenum cofactor biosynthesis.
 
  
 0.825
Sfum_2819
PFAM: protein of unknown function DUF134; KEGG: cte:CT1277 hypothetical protein; Belongs to the UPF0251 family.
 
     0.738
Sfum_2078
PFAM: beta-lactamase domain protein; KEGG: gsu:GSU0397 metallo-beta-lactamase family protein.
 
     0.688
Sfum_3411
PFAM: nitrogen-fixing NifU domain protein; KEGG: dps:DP0957 similar to nitrogen fixation protein (NifU).
     
 0.678
Sfum_3613
ParA family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
 
 0.540
Sfum_2713
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: gsu:GSU2721 NAD-reducing hydrogenase, alpha subunit.
   
 
 0.524
Sfum_1303
Conserved hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
 
 0.520
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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