STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3458PFAM: NUDIX hydrolase; KEGG: aba:Acid345_1350 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (153 aa)    
Predicted Functional Partners:
Sfum_1206
PFAM: NUDIX hydrolase; KEGG: gme:Gmet_0988 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
 
   
 0.785
Sfum_3457
PFAM: nuclease (SNase domain protein); KEGG: chy:CHY_1698 prophage LambdaCh01, nuclease domain protein.
  
    0.632
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
    0.449
Sfum_3459
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: cpe:CPE0029 probable transcription regulator.
  
  
 0.437
Sfum_0480
PFAM: NUDIX hydrolase; KEGG: hch:HCH_10012 ADP-ribose pyrophosphatase.
  
   
0.433
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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