STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3489KEGG: hch:HCH_05415 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components. (610 aa)    
Predicted Functional Partners:
Sfum_3487
PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05413 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
 
     0.921
Sfum_3490
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_05416 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
  
 0.908
Sfum_3491
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_05418 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.888
Sfum_3492
KEGG: hch:HCH_05410 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
 
     0.850
Sfum_3488
PFAM: von Willebrand factor, type A; KEGG: hch:HCH_05414 uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
       0.756
tolB
TolB, N-terminal domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.690
Sfum_1624
KEGG: bth:BT4426 hypothetical protein.
  
 
 0.690
Sfum_3746
PFAM: outer membrane chaperone Skp (OmpH); KEGG: sat:SYN_01569 outer membrane protein.
  
 
 0.662
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
 
 
 0.646
Sfum_1357
Hypothetical protein; KEGG: bxe:Bxe_A1032 putative prolin-rich transmembrane protein.
  
    0.637
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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