STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3492KEGG: hch:HCH_05410 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components. (360 aa)    
Predicted Functional Partners:
Sfum_3491
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_05418 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.957
Sfum_3490
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_05416 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
  
 0.954
Sfum_3489
KEGG: hch:HCH_05415 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
 
     0.850
Sfum_3487
PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05413 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
 
     0.833
Sfum_2218
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll3191 ABC transporter permease protein.
 
  
 0.755
Sfum_1642
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2935 binding-protein-dependent transport systems inner membrane component.
 
  
 0.754
Sfum_2216
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll3191 ABC transporter permease protein.
 
  
 0.722
Sfum_3945
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.693
Sfum_2215
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb1858 ABC-type nitrate/sulfonate/bicarbonate transport system.
 
  
 0.661
Sfum_2217
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb1858 ABC-type nitrate/sulfonate/bicarbonate transport system.
 
  
 0.654
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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