STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3537PFAM: nickel-dependent hydrogenase, large subunit; KEGG: dps:DP1013 methylviologen-reducing hydrogenase, alpha chain. (469 aa)    
Predicted Functional Partners:
Sfum_3536
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: dps:DP1012 similar to methyl viologen-reducing hydrogenase, gamma chain.
 
 
 0.968
Sfum_1792
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: dps:DP1012 similar to methyl viologen-reducing hydrogenase, gamma chain.
 
 
 0.921
Sfum_2222
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: deh:cbdb_A596 hydrogenase, group 3, VhuG subunit.
 
 
 0.921
Sfum_2715
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: gme:Gmet_1112 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.921
Sfum_3955
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: dps:DP1012 similar to methyl viologen-reducing hydrogenase, gamma chain.
 
 
 0.920
Sfum_2713
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: gsu:GSU2721 NAD-reducing hydrogenase, alpha subunit.
   
 
 0.878
Sfum_2704
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: chy:CHY_0732 Fe-hydrogenase, beta subunit.
   
 
 0.868
Sfum_0845
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
   
 
 0.867
Sfum_3530
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: dps:DP1008 related to coenzyme F420 hydrogenase, delta subunit.
 
  
 0.837
Sfum_3535
PFAM: methyl-viologen-reducing hydrogenase, delta subunit; KEGG: dps:DP1011 methyl-viologen-reducing hydrogenase, delta subunit.
  
  
 0.715
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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