STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3580PFAM: Asp/Glu racemase; KEGG: pho:PH0985 arylmalonate decarboxylase. (262 aa)    
Predicted Functional Partners:
Sfum_1445
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: lla:L137630 fumarate reductase flavoprotein subunit.
 
 
  0.930
Sfum_0174
KEGG: plt:Plut_1995 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 
  0.903
Sfum_1999
KEGG: dde:Dde_1257 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 
  0.903
Sfum_2104
KEGG: sru:SRU_0485 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
  0.903
Sfum_0173
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: sth:STH2640 succinate dehydrogenase iron-sulfur protein.
    
  0.900
Sfum_1998
Succinate dehydrogenase subunit B; KEGG: dvu:DVU3263 fumarate reductase, iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
    
  0.900
Sfum_2000
PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit.
     
  0.900
Sfum_2103
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: tth:TTC1089 succinate dehydrogenase iron-sulfur protein.
    
  0.900
Sfum_3581
PFAM: Asp/Glu racemase; KEGG: ret:RHE_PF00355 hypothetical protein.
 
     0.849
Sfum_0589
PFAM: fumarate lyase; KEGG: rfr:Rfer_3846 fumarate lyase.
     
 0.821
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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