STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3581PFAM: Asp/Glu racemase; KEGG: ret:RHE_PF00355 hypothetical protein. (222 aa)    
Predicted Functional Partners:
Sfum_3580
PFAM: Asp/Glu racemase; KEGG: pho:PH0985 arylmalonate decarboxylase.
 
     0.849
Sfum_3579
PFAM: beta-lactamase domain protein; KEGG: sso:SSO2940 hypothetical protein.
 
     0.532
Sfum_3582
TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; KEGG: chy:CHY_1288 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.420
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.