STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3659Hypothetical protein. (193 aa)    
Predicted Functional Partners:
Sfum_3660
PFAM: Fimbrial assembly family protein; KEGG: mca:MCA1121 general secretion pathway protein l, putative.
       0.788
Sfum_3661
Type II secretory pathway component PulK-like; KEGG: mca:MCA1120 general secretion pathway protein K domain protein.
       0.705
Sfum_3664
TIGRFAM: general secretion pathway protein H; KEGG: eba:ebA1616 general secretion protein H.
       0.627
Sfum_3663
Hypothetical protein.
       0.605
Sfum_3662
Hypothetical protein.
       0.600
Sfum_3658
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0761 general secretion pathway protein D; Belongs to the bacterial secretin family.
       0.516
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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