STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3703PFAM: transport system permease protein; KEGG: pca:Pcar_0154 ABC-type iron (III) transport system; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (341 aa)    
Predicted Functional Partners:
Sfum_3704
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_01054 iron(III) dicitrate transport ATP-binding protein.
 
 0.993
Sfum_3702
PFAM: periplasmic binding protein; KEGG: sat:SYN_01056 iron(III) dicitrate-binding protein.
 
 
 0.987
Sfum_0495
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC1989 ABC-type iron (III) transport system, ATPase component.
 
 0.971
Sfum_2133
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1933 iron ABC transporter ATP-binding protein.
 
 0.968
Sfum_2739
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1933 iron ABC transporter ATP-binding protein.
 
 0.967
Sfum_0493
PFAM: periplasmic binding protein; KEGG: hac:Hac_1669 iron(III) ABC transporter, periplasmic iron-binding protein.
 
 
 0.948
Sfum_2741
PFAM: periplasmic binding protein; KEGG: sat:SYN_01423 ABC-type transporter cobalamide binding protein.
 
 
 0.939
Sfum_2132
PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative.
 
 
 0.938
Sfum_1720
PFAM: periplasmic binding protein; KEGG: sat:SYN_01423 ABC-type transporter cobalamide binding protein.
 
 
 0.919
Sfum_2743
PFAM: periplasmic binding protein; protein of unknown function DUF105; KEGG: mja:MJ1613 hypothetical protein.
 
 
 0.865
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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