STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3775KEGG: dde:Dde_1936 putative phage-related protein. (140 aa)    
Predicted Functional Partners:
Sfum_3776
Recombinase; PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: dde:Dde_1935 site-specific recombinase.
  
 0.962
Sfum_3777
KEGG: dde:Dde_1934 putative bacteriophage-related protein.
 
  
 0.957
Sfum_3790
PFAM: DNA primase catalytic core, N-terminal domain; SMART: zinc finger, CHC2-family protein; KEGG: dde:Dde_1921 DNA primase-like.
 
   
 0.795
Sfum_3786
KEGG: dde:Dde_1925 hypothetical protein.
 
     0.783
Sfum_3788
PFAM: ERCC4 domain protein; KEGG: dde:Dde_1923 hypothetical protein.
 
     0.740
Sfum_3843
KEGG: dde:Dde_0959 hypothetical protein.
 
     0.715
Sfum_3840
KEGG: dde:Dde_1866 hypothetical protein.
  
     0.710
Sfum_3806
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: dde:Dde_0922 adenine-specific DNA methylase-like.
 
     0.704
Sfum_3778
KEGG: dde:Dde_1933 hypothetical protein.
       0.693
Sfum_3803
TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; PFAM: phage putative head morphogenesis protein, SPP1 gp7; KEGG: dde:Dde_0919 phage putative head morphogenesis protein, SPP1 gp7.
  
     0.676
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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