STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3856PFAM: protein of unknown function DUF1232; KEGG: ret:RHE_CH01706 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Sfum_3854
T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.697
Sfum_3855
KEGG: eba:ebD63 hypothetical protein.
       0.697
Sfum_3853
KEGG: nma:NMA0428 hypothetical protein.
       0.645
Sfum_3846
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bps:BPSL0763 putative helicase SNF2 family protein.
       0.632
Sfum_3851
KEGG: bps:BPSL0766 hypothetical protein.
       0.629
Sfum_3852
PFAM: phospholipase D/Transphosphatidylase; KEGG: bps:BPSL0767 putative phospholipase protein.
       0.629
Sfum_3849
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: hch:HCH_01952 serine/threonine protein kinase.
  
    0.628
Sfum_3844
Phage transcriptional regulator, AlpA; TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: cte:CT0674 VrlI protein.
       0.620
Sfum_3845
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: xft:PD0577 site-specific DNA-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
       0.620
Sfum_3847
KEGG: bps:BPSL0764 hypothetical protein.
       0.620
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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