STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3942Hypothetical protein. (148 aa)    
Predicted Functional Partners:
Sfum_3944
Hypothetical protein.
       0.797
Sfum_3945
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.784
Sfum_3943
KEGG: mka:MK0601 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic component.
       0.781
Sfum_3940
Hypothetical protein.
       0.719
Sfum_3941
PFAM: permease; KEGG: dde:Dde_0132 permease, putative.
       0.707
Sfum_3946
Hypothetical protein.
       0.652
Sfum_3947
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd2748 ABC transporter ATP-binding protein.
       0.562
Sfum_3939
Hypothetical protein.
       0.508
Sfum_3948
Hypothetical protein; KEGG: nfa:pnf2590 putative alkylmercury lyase.
       0.493
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.