STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3950PFAM: extracellular solute-binding protein, family 3; KEGG: dps:DP1559 probable amino acid ABC transporter, periplasmic substrate-binding protein. (258 aa)    
Predicted Functional Partners:
Sfum_3951
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1560 probable amino acid ABC transporter, permease protein.
 0.999
Sfum_0815
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU2650 amino acid ABC transporter, permease protein, putative.
 
 0.985
Sfum_3900
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.984
Sfum_3902
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0387 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family.
 
 0.984
Sfum_3164
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2659 glutamate/aspartate ABC transporter, permease protein.
 
 0.969
Sfum_3165
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2660 glutamate/aspartate ABC transporter, permease protein.
 
 0.961
Sfum_0817
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nma:NMA0900 putative polar amino acid transport system ATP-binding protein.
 
 
 0.861
Sfum_3166
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0502 ABC transporter related.
 
 
 0.861
Sfum_3901
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0184 polar amino acid transport system ATP-binding proetin.
 
 
 0.859
Sfum_3949
KEGG: dps:DP1558 hypothetical protein.
 
     0.821
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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