STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_4085PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: sat:SYN_01481 adenylate cyclase. (746 aa)    
Predicted Functional Partners:
Sfum_0907
Putative PAS/PAC sensor protein; PFAM: GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: ava:Ava_0091 adenylate/guanylate cyclase.
 
 0.979
Sfum_0500
PFAM: nucleoside diphosphate kinase; KEGG: tko:TK1307 nucleoside diphosphate kinase; Belongs to the NDK family.
    
 0.915
Sfum_3908
Hypothetical protein.
    
 0.914
Sfum_1475
PFAM: pyruvate kinase; KEGG: sat:SYN_02952 pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.906
Sfum_2959
PFAM: pyruvate kinase; KEGG: sat:SYN_02952 pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.906
Sfum_1513
PFAM: cyclic nucleotide-binding; Rhodanese domain protein; KEGG: ttj:TTHA1437 transcription regulator, Crp family.
 
 0.894
Sfum_2177
PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sat:SYN_02361 HD-GYP domain protein.
 
 0.832
Sfum_4083
Solute binding protein-like; KEGG: cho:Chro.30098 hypothetical protein.
 
     0.827
Sfum_3249
PFAM: cyclic nucleotide-binding; KEGG: dde:Dde_0723 cyclic nucleotide-binding domain (cNMP-BD) protein.
 
 0.825
ribBA
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.819
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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