Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S23_02470Putative transmembrane protein. (433 aa)    
Predicted Functional Partners:
S23_63400
Cation efflux system protein.
  
     0.705
gapA
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.670
rpsA
30S ribosomal protein S1.
  
    0.658
S23_02480
Hypothetical protein.
 
     0.642
rnc
RNase III.
   
 
  0.639
S23_66630
ATP-dependent helicase.
     
  0.635
S23_49440
Hypothetical protein.
   
  0.624
S23_63310
Hypothetical protein.
   
  0.624
rplO
50S ribosomal protein L15.
    
   0.598
ffh
Signal recognition particle protein.
 
  
 0.583
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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