Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
sdhDSuccinate dehydrogenase hydrophobic membrane anchor protein subunit. (134 aa)    
Predicted Functional Partners:
sdhB
Succinate dehydrogenase iron-sulfur subunit.
 
 0.999
sdhC
Succinate dehydrogenase cytochrome B-556 subunit.
 
 0.999
sdhA
Succinate dehydrogenase flaboprotein subunit.
 
 0.998
sucC
succinyl-CoA synthetase subunit beta.
  
 
 0.988
S23_24400
Fumarate hydratase class I.
  
 
 0.986
S23_48010
Putative oxidoreductase.
  
 0.974
S23_06980
Hypothetical protein.
  
 0.964
S23_14790
Putative dehydrogenase.
  
 0.964
S23_36540
Fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein.
  
 0.964
S23_52720
Putative fumarate reductase/succinate dehydrogenase flavoprotein.
  
 0.964
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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