Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S23_03350Putative acetyltransferase. (212 aa)    
Predicted Functional Partners:
pssA
Polysaccharide biosynthesis glycosyltransferase.
  
  
 0.833
phnJ
Putative PhnJ protein.
 
     0.702
phnI
Putative PhnI protein.
 
     0.691
phnL
Putative phosphonate ABC transporter ATP-binding protein.
 
     0.688
phnH
Putative PhnH protein.
 
     0.687
phnK
Putative phosphonate transport ATP-binding protein PhnK.
 
     0.682
S23_22630
DegT/DnrJ/EryC1/StrS aminotransferase.
  
 
 0.668
S23_22700
DegT family aminotransferase.
  
 
 0.668
S23_23380
DegT/DnrJ/EryC1/StrS family protein.
  
 
 0.668
S23_46160
Putative aminotransferase DegT/DnrJ/EryC1/StrS family.
  
 
 0.668
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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