STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
S23_03490Putative DNA-binding protein. (270 aa)    
Predicted Functional Partners:
S23_39840
Putative NAD-dependent epimerase/dehydratase.
 
  
  0.626
S23_24400
Fumarate hydratase class I.
     
  0.606
thiS
Thiamin biosynthesis protein.
     
  0.566
S23_18760
Glucose-1-phosphate adenylyltransferease.
     
  0.566
S23_03480
Hypothetical protein.
       0.554
S23_15700
Putative ferredoxin oxidoreductase alpha subunit.
    
  0.551
moeB
Molybdopterin biosynthesis protein.
     
  0.528
dme
NAD-dependent malic enzyme.
    
  0.523
nadE
Glutamine-dependent NAD(+) synthetase.
    
 0.489
nadE-2
NAD synthetase.
    
 0.489
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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