Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cheY-2Chemotaxis protein CheY. (129 aa)    
Predicted Functional Partners:
cheA
Chemotaxis two-component hybrid sensor and regulator.
 
 0.982
S23_53770
Putative sensor histidine kinase with a GAF domain and multiple HAMP and response regulator receiver domains.
  
 0.975
cheW
Transducer coupling protein.
 
 0.963
cheA-6
Two-component hybrid sensor and regulator.
 
 0.957
S23_61620
Hypothetical protein.
 
 0.931
Aer
Probable aerotaxis receptor.
 
 0.921
cheR1
Protein-glutamate O-methyltransferase.
 
 
 0.910
S23_24520
Histidine kinase.
 
 0.909
S23_24350
Two-component hybrid sensor and regulator.
 
 
 0.908
cheA-4
Putative sensor histidine kinase with a PAS domain.
 
 
 0.901
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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