Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ptsPPhosphoenolpyruvate-protein phosphotransferase. (755 aa)    
Predicted Functional Partners:
ptsH
Phosphocarrier protein HPr.
  
 
 0.977
S23_53770
Putative sensor histidine kinase with a GAF domain and multiple HAMP and response regulator receiver domains.
   
 0.867
ptsN
Nitrogen regulatory protein.
  
   
 0.826
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase.
    
  0.797
cheA-2
Putative sensor histidine kinase with two PAS and a response regulator receiver domains.
   
 0.786
ribA
3,4-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II.
     
  0.763
prfA
Peptide chain release factor 1.
       0.729
hemK
Protoporphyrinogen oxidase.
       0.717
lysC
Aspartokinase.
     
 0.707
S23_68470
Two-component response regulator.
   
 0.665
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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