Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S23_07970SUR1-like protein. (250 aa)    
Predicted Functional Partners:
cox15
Cytochrome oxidase assembly factor.
 
 0.973
coxG
Cytochrome C oxidase assembly protein.
 
 0.942
coxE
Protoheme IX farnesyltransferase.
 
 
 0.909
cyoA
Cytochrome o ubiquinol oxidase subunit II.
 
 0.877
fbcH
Cytochrome b/c1 precursor.
    
 
 0.864
coxA
Cytochrome C oxidase subunit I.
  
 0.854
coxC
Cytochrome C oxidase subunit III.
 
 
 0.852
coxB
Cytochrome c oxidase subunit II.
  
 0.851
S23_07960
Hypothetical protein.
 
     0.841
cyoB
Cytochrome O ubiquinol oxidase subunit I.
 
 0.840
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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