STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimJRibosomal-protein-alanine N-acetyltransferase. (195 aa)    
Predicted Functional Partners:
thrC
Threonine synthase.
       0.756
mpp
Mitochondrial processing peptidase-like protein.
       0.756
gltB
Glutamate synthase large subunit.
   
 
 0.715
rnc
RNase III.
   
    0.662
S23_15700
Putative ferredoxin oxidoreductase alpha subunit.
    
  0.630
pdhB
Pyruvate dehydrogenase subunit beta.
    
  0.618
S23_08040
Hypothetical protein.
       0.608
S23_59170
Pyruvate carboxylase.
     
  0.589
murB
UDP-N-acetylenolpyruvoylglucosamine reductase.
  
    0.583
S23_66250
Putative sensor histidine kinase.
  
     0.576
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.