Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S23_21680Hypothetical protein. (412 aa)    
Predicted Functional Partners:
S23_21670
Putative secreted protein related to heme utilisation.
 
     0.862
S23_23960
Hypothetical protein.
  
     0.727
S23_04320
Hypothetical protein.
  
     0.726
S23_23600
Hypothetical protein.
  
     0.708
S23_61330
Hypothetical protein.
  
     0.705
S23_04360
Hypothetical protein.
  
     0.700
S23_04620
Hypothetical protein.
  
     0.681
S23_07290
Hypothetical protein.
  
     0.679
S23_49340
Hypothetical protein.
  
   
 0.678
S23_30420
Hypothetical protein.
 
 
 0.674
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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