STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S23_31270Putative oxidoreductase. (325 aa)    
Predicted Functional Partners:
S23_31280
Putative 2-nitropropane dioxygenase.
 
  
 
0.899
nirK
Respiratory nitrite reductase.
     
  0.871
napB
Periplasmic nitrate reductase small subunit precursor.
     
  0.871
napA
Periplasmic nitrate reductase large subunit precursor.
     
  0.871
S23_35380
Putative ferredoxin-nitrite reductase.
     
  0.871
nasA
Nitrate reductase large subunit.
     
  0.871
S23_51900
Putative nitrite reductase.
     
  0.871
S23_56370
Polyketide/non-ribosomal peptide synthetase.
  
 
 0.809
S23_62670
Hypothetical protein.
  
 0.768
fabB
3-oxoacyl-(acyl carrier protein) synthase I.
  
 
 0.762
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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